Uses of Class
org.broad.igv.track.WindowFunction

Packages that use WindowFunction

net.sf.jannot.tdf
org.broad.igv.data
org.broad.igv.feature
org.broad.igv.tdf
org.broad.igv.tools
org.broad.igv.track
org.broad.tools

Uses of WindowFunction in net.sf.jannot.tdf

Methods in net.sf.jannot.tdf that return types with arguments of type WindowFunction

java.util.List<WindowFunction>

TDFData.availableWindowFunctions()

Methods in net.sf.jannot.tdf with parameters of type WindowFunction

boolean	TDFData.isCurrentWindowFunction(WindowFunction wf)
void	TDFData.requestWindowFunction(WindowFunction wf)

Uses of WindowFunction in org.broad.igv.data

Methods in org.broad.igv.data that return WindowFunction

WindowFunction

DataSource.getWindowFunction()

Methods in org.broad.igv.data that return types with arguments of type WindowFunction

java.util.Collection<WindowFunction>

DataSource.getAvailableWindowFunctions()

Methods in org.broad.igv.data with parameters of type WindowFunction

java.lang.String	BasicScore.getValueString(double position, WindowFunction windowFunction)
void	DataSource.setWindowFunction(WindowFunction statType)

Uses of WindowFunction in org.broad.igv.feature

Methods in org.broad.igv.feature with parameters of type WindowFunction

java.lang.String

LocusScore.getValueString(double position, WindowFunction windowFunction) Return a string to be used for popup text.

Uses of WindowFunction in org.broad.igv.tdf

Methods in org.broad.igv.tdf that return types with arguments of type WindowFunction

java.util.List<WindowFunction>

TDFReader.getWindowFunctions()

Methods in org.broad.igv.tdf with parameters of type WindowFunction

TDFDataset

TDFReader.getDataset(java.lang.String chr, int zoom, WindowFunction windowFunction)

Constructor parameters in org.broad.igv.tdf with type arguments of type WindowFunction

TDFWriter(java.io.File f, java.lang.String genomeId, java.lang.String trackType, java.lang.String trackLine, java.lang.String[] trackNames, java.util.Collection<WindowFunction> windowFunctions, boolean compressed)

Uses of WindowFunction in org.broad.igv.tools

Methods in org.broad.igv.tools with parameters of type WindowFunction

double	Accumulator.getPercentile(WindowFunction wf)
float	Accumulator.getValue(WindowFunction wf)

Constructor parameters in org.broad.igv.tools with type arguments of type WindowFunction

Accumulator(java.util.Collection<WindowFunction> windowFunctions)

Uses of WindowFunction in org.broad.igv.track

Methods in org.broad.igv.track that return WindowFunction

static WindowFunction	WindowFunction.getWindowFunction(java.lang.String name)
static WindowFunction	WindowFunction.valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static WindowFunction[]	WindowFunction.values() Returns an array containing the constants of this enum type, in the order they are declared.

Uses of WindowFunction in org.broad.tools

Method parameters in org.broad.tools with type arguments of type WindowFunction

void	TDFTools.doCount(java.lang.String ifile, java.lang.String ofile, java.util.Collection<WindowFunction> windowFunctions) Compute coverage or density of an alignment or feature file.