org.broad.igv.feature
Interface LocusScore

All Superinterfaces:

Feature

All Known Implementing Classes:

BasicScore

public interface LocusScore
extends Feature

Author:

jrobinso

Method Summary

LocusScore	copy()
float	getConfidence()
float	getScore()
java.lang.String	getValueString(double position, WindowFunction windowFunction) Return a string to be used for popup text.
void	setConfidence(float confidence)
void	setEnd(int end)
void	setStart(int start)

Methods inherited from interface org.broad.tribble.Feature

getChr, getEnd, getStart

Method Detail

setStart

void setStart(int start)

setEnd

void setEnd(int end)

getScore

float getScore()

setConfidence

void setConfidence(float confidence)

getConfidence

float getConfidence()

copy

LocusScore copy()

getValueString

java.lang.String getValueString(double position,
                                WindowFunction windowFunction)

Return a string to be used for popup text. The WindowFunction is passed in so it can be used t annotate the value. The LocusScore object itself does not "know" from what window function it was derived

Parameters:

windowFunction -

Returns: