org.broad.igv.tdf
Class TDFDataset

java.lang.Object
  org.broad.igv.tdf.TDFEntity
      org.broad.igv.tdf.TDFDataset

public class TDFDataset
extends TDFEntity

Represents the data for a particular chromosome and zoom level

Author:

jrobinso

Nested Class Summary

static class

TDFDataset.DataType

Constructor Summary

TDFDataset(java.lang.String name, java.nio.ByteBuffer byteBuffer, TDFReader reader)

TDFDataset(java.lang.String name, TDFDataset.DataType dataType, int tileWidth, int nTiles)

Method Summary

int	getNumberOfTiles()
TDFTile	getTile(int t)
java.util.List<TDFTile>	getTiles(int startLocation, int endLocation)
int	getTileWidth()
void	write(BufferedByteWriter dos)

Methods inherited from class org.broad.igv.tdf.TDFEntity

getAttribute, getAttributeNames, getName, setAttribute, writeString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TDFDataset

public TDFDataset(java.lang.String name,
                  TDFDataset.DataType dataType,
                  int tileWidth,
                  int nTiles)

TDFDataset

public TDFDataset(java.lang.String name,
                  java.nio.ByteBuffer byteBuffer,
                  TDFReader reader)
           throws java.io.IOException

Throws:

java.io.IOException

Method Detail

write

public void write(BufferedByteWriter dos)
           throws java.io.IOException

Throws:

java.io.IOException

getTiles

public java.util.List<TDFTile> getTiles(int startLocation,
                                        int endLocation)

getTile

public TDFTile getTile(int t)

getNumberOfTiles

public int getNumberOfTiles()

Returns:

getTileWidth

public int getTileWidth()

Returns: