org.broad.igv.tdf
Class TDFBedTile

java.lang.Object
  org.broad.igv.tdf.TDFBedTile

All Implemented Interfaces:

TDFTile

public class TDFBedTile
extends java.lang.Object
implements TDFTile

Author:

jrobinso

Nested Class Summary

Nested classes/interfaces inherited from interface org.broad.igv.tdf.TDFTile

TDFTile.Type

Constructor Summary

TDFBedTile(java.nio.ByteBuffer byteBuffer, int nSamples, TDFTile.Type type)

TDFBedTile(int tileStart, int[] start, int[] end, float[][] data)

TDFBedTile(int tileStart, int[] start, int[] end, float[][] data, java.lang.String[] name)

Method Summary

int	getEndPosition(int idx)
java.lang.String	getName(int idx)
int	getSize()
int	getStartPosition(int idx)
int	getTileEnd()
int	getTileStart()
float	getValue(int row, int idx)
int	noValues() Returns the number of values that are available for each position in this Tile.
void	writeTo(BufferedByteWriter fos)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TDFBedTile

public TDFBedTile(java.nio.ByteBuffer byteBuffer,
                  int nSamples,
                  TDFTile.Type type)
           throws java.io.IOException

Throws:

java.io.IOException

TDFBedTile

public TDFBedTile(int tileStart,
                  int[] start,
                  int[] end,
                  float[][] data)

TDFBedTile

public TDFBedTile(int tileStart,
                  int[] start,
                  int[] end,
                  float[][] data,
                  java.lang.String[] name)

Method Detail

getSize

public int getSize()

Specified by:

getSize in interface TDFTile

getTileStart

public int getTileStart()

Specified by:

getTileStart in interface TDFTile

getTileEnd

public int getTileEnd()

getStartPosition

public int getStartPosition(int idx)

Specified by:

getStartPosition in interface TDFTile

getEndPosition

public int getEndPosition(int idx)

Specified by:

getEndPosition in interface TDFTile

getName

public java.lang.String getName(int idx)

Specified by:

getName in interface TDFTile

getValue

public float getValue(int row,
                      int idx)

Specified by:

getValue in interface TDFTile

writeTo

public void writeTo(BufferedByteWriter fos)
             throws java.io.IOException

Specified by:

writeTo in interface TDFTile

Throws:

java.io.IOException

noValues

public int noValues()

Description copied from interface: TDFTile

Returns the number of values that are available for each position in this Tile.

Specified by:

noValues in interface TDFTile

Returns: