org.broad.igv.bbfile
Class ZoomDataBlock

java.lang.Object
  org.broad.igv.bbfile.ZoomDataBlock

public class ZoomDataBlock
extends java.lang.Object

File retrieved from BigWig project at Google code on July 26, 2011, revision 36 http://code.google.com/p/bigwig/ This project provides java readers for the UCSC's BigWig and BigBed formats. It was originally developed by Martin Decautis and Jim Robinson for the Integrative Genomics Viewer (http://www.broadinstitute.org/igv). Thanks to Jim Kent and Ann Zweig and from UCSC for their assistance. Modification to work with GenomeView by Thomas Abeel.

Author:

Martin Decautis, Jim Robinson, Thomas Abeel

Constructor Summary

ZoomDataBlock(int zoomLevel, net.sf.samtools.util.SeekableStream fis, RPTreeLeafNodeItem leafHitItem, java.util.HashMap<java.lang.Integer,java.lang.String> chromosomeMap, boolean isLowToHigh, int uncompressBufSize)

Method Summary

java.util.ArrayList<ZoomDataRecord>	getZoomData(RPChromosomeRegion selectionRegion, boolean contained)
void	print()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ZoomDataBlock

public ZoomDataBlock(int zoomLevel,
                     net.sf.samtools.util.SeekableStream fis,
                     RPTreeLeafNodeItem leafHitItem,
                     java.util.HashMap<java.lang.Integer,java.lang.String> chromosomeMap,
                     boolean isLowToHigh,
                     int uncompressBufSize)

Method Detail

getZoomData

public java.util.ArrayList<ZoomDataRecord> getZoomData(RPChromosomeRegion selectionRegion,
                                                       boolean contained)

print

public void print()