org.broad.igv.bbfile
Class WigItem

java.lang.Object
  org.broad.igv.bbfile.WigItem

public class WigItem
extends java.lang.Object

File retrieved from BigWig project at Google code on July 26, 2011, revision 36 http://code.google.com/p/bigwig/ This project provides java readers for the UCSC's BigWig and BigBed formats. It was originally developed by Martin Decautis and Jim Robinson for the Integrative Genomics Viewer (http://www.broadinstitute.org/igv). Thanks to Jim Kent and Ann Zweig and from UCSC for their assistance. Modification to work with GenomeView by Thomas Abeel.

Author:

Martin Decautis, Jim Robinson, Thomas Abeel

Constructor Summary

WigItem(int itemIndex, java.lang.String chromosome, int startBase, int endBase, float wigValue)

Method Summary

java.lang.String	getChromosome()
int	getEndBase()
int	getItemNumber()
int	getStartBase()
float	getWigValue()
void	print()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

WigItem

public WigItem(int itemIndex,
               java.lang.String chromosome,
               int startBase,
               int endBase,
               float wigValue)

Method Detail

getItemNumber

public int getItemNumber()

getChromosome

public java.lang.String getChromosome()

getStartBase

public int getStartBase()

getEndBase

public int getEndBase()

getWigValue

public float getWigValue()

print

public void print()