org.broad.igv.bbfile
Interface RPTreeNode

All Known Implementing Classes:

RPTreeChildNode, RPTreeLeafNode

public interface RPTreeNode

File retrieved from BigWig project at Google code on July 26, 2011, revision 36 http://code.google.com/p/bigwig/ This project provides java readers for the UCSC's BigWig and BigBed formats. It was originally developed by Martin Decautis and Jim Robinson for the Integrative Genomics Viewer (http://www.broadinstitute.org/igv). Thanks to Jim Kent and Ann Zweig and from UCSC for their assistance. Modification to work with GenomeView by Thomas Abeel.

Author:

Martin Decautis, Jim Robinson, Thomas Abeel

Method Summary

int	compareRegions(RPChromosomeRegion chromosomeRegion)
boolean	deleteItem(int index)
RPChromosomeRegion	getChromosomeBounds()
org.broad.igv.bbfile.RPTreeNodeItem	getItem(int index)
int	getItemCount()
boolean	insertItem(org.broad.igv.bbfile.RPTreeNodeItem item)
boolean	isLeaf()
void	printItems()

Method Detail

isLeaf

boolean isLeaf()

getChromosomeBounds

RPChromosomeRegion getChromosomeBounds()

compareRegions

int compareRegions(RPChromosomeRegion chromosomeRegion)

getItemCount

int getItemCount()

getItem

org.broad.igv.bbfile.RPTreeNodeItem getItem(int index)

insertItem

boolean insertItem(org.broad.igv.bbfile.RPTreeNodeItem item)

deleteItem

boolean deleteItem(int index)

printItems

void printItems()