org.broad.igv.bbfile
Class RPTreeLeafNode

java.lang.Object
  org.broad.igv.bbfile.RPTreeLeafNode

All Implemented Interfaces:

RPTreeNode

public class RPTreeLeafNode
extends java.lang.Object
implements RPTreeNode

File retrieved from BigWig project at Google code on July 26, 2011, revision 36 http://code.google.com/p/bigwig/ This project provides java readers for the UCSC's BigWig and BigBed formats. It was originally developed by Martin Decautis and Jim Robinson for the Integrative Genomics Viewer (http://www.broadinstitute.org/igv). Thanks to Jim Kent and Ann Zweig and from UCSC for their assistance. Modification to work with GenomeView by Thomas Abeel.

Author:

Martin Decautis, Jim Robinson, Thomas Abeel

Constructor Summary

RPTreeLeafNode()

Method Summary

int	compareRegions(RPChromosomeRegion chromosomeRegion)
boolean	deleteItem(int index)
RPChromosomeRegion	getChromosomeBounds()
org.broad.igv.bbfile.RPTreeNodeItem	getItem(int index)
int	getItemCount()
boolean	insertItem(org.broad.igv.bbfile.RPTreeNodeItem item)
boolean	isLeaf()
void	printItems()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RPTreeLeafNode

public RPTreeLeafNode()

Method Detail

isLeaf

public boolean isLeaf()

Specified by:

isLeaf in interface RPTreeNode

getChromosomeBounds

public RPChromosomeRegion getChromosomeBounds()

Specified by:

getChromosomeBounds in interface RPTreeNode

compareRegions

public int compareRegions(RPChromosomeRegion chromosomeRegion)

Specified by:

compareRegions in interface RPTreeNode

getItemCount

public int getItemCount()

Specified by:

getItemCount in interface RPTreeNode

getItem

public org.broad.igv.bbfile.RPTreeNodeItem getItem(int index)

Specified by:

getItem in interface RPTreeNode

insertItem

public boolean insertItem(org.broad.igv.bbfile.RPTreeNodeItem item)

Specified by:

insertItem in interface RPTreeNode

deleteItem

public boolean deleteItem(int index)

Specified by:

deleteItem in interface RPTreeNode

printItems

public void printItems()

Specified by:

printItems in interface RPTreeNode