org.broad.igv.bbfile
Class RPTreeLeafNodeItem

java.lang.Object
  org.broad.igv.bbfile.RPChromosomeRegion
      org.broad.igv.bbfile.RPTreeLeafNodeItem

public class RPTreeLeafNodeItem
extends RPChromosomeRegion

File retrieved from BigWig project at Google code on July 26, 2011, revision 36 http://code.google.com/p/bigwig/ This project provides java readers for the UCSC's BigWig and BigBed formats. It was originally developed by Martin Decautis and Jim Robinson for the Integrative Genomics Viewer (http://www.broadinstitute.org/igv). Thanks to Jim Kent and Ann Zweig and from UCSC for their assistance. Modification to work with GenomeView by Thomas Abeel.

Author:

Martin Decautis, Jim Robinson, Thomas Abeel

Constructor Summary

RPTreeLeafNodeItem(int startChromID, int startBase, int endChromID, int endBase, long dataOffset, long dataSize)

Method Summary

int	compareRegions(RPChromosomeRegion chromosomeRegion)
long	geDataSize()
RPChromosomeRegion	getChromosomeBounds()
long	getDataOffset()
void	print()

Methods inherited from class org.broad.igv.bbfile.RPChromosomeRegion

compareRegions, containedIn, disjointAbove, disjointBelow, equals, expand, getEndBase, getEndChromID, getExtremes, getStartBase, getStartChromID, intersectsAbove, intersectsBelow

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RPTreeLeafNodeItem

public RPTreeLeafNodeItem(int startChromID,
                          int startBase,
                          int endChromID,
                          int endBase,
                          long dataOffset,
                          long dataSize)

Method Detail

getChromosomeBounds

public RPChromosomeRegion getChromosomeBounds()

print

public void print()

Overrides:

print in class RPChromosomeRegion

getDataOffset

public long getDataOffset()

geDataSize

public long geDataSize()

compareRegions

public int compareRegions(RPChromosomeRegion chromosomeRegion)