org.broad.igv.bbfile
Class ZoomDataRecord

java.lang.Object
  org.broad.igv.bbfile.ZoomDataRecord

public class ZoomDataRecord
extends java.lang.Object

File retrieved from BigWig project at Google code on July 26, 2011, revision 36 http://code.google.com/p/bigwig/ This project provides java readers for the UCSC's BigWig and BigBed formats. It was originally developed by Martin Decautis and Jim Robinson for the Integrative Genomics Viewer (http://www.broadinstitute.org/igv). Thanks to Jim Kent and Ann Zweig and from UCSC for their assistance. Modification to work with GenomeView by Thomas Abeel.

Author:

Martin Decautis, Jim Robinson, Thomas Abeel

Field Summary

static int

RECORD_SIZE

Constructor Summary

ZoomDataRecord(int zoomLevel, int recordNumber, java.lang.String chromName, int chromId, int chromStart, int chromEnd, int validCount, float minVal, float maxVal, float sumData, float sumSquares)

Method Summary

int	getBasesCovered()
int	getChromEnd()
int	getChromId()
java.lang.String	getChromName()
int	getChromStart()
float	getMaxVal()
float	getMeanVal()
float	getMinVal()
int	getRecordNumber()
float	getSumData()
float	getSumSquares()
int	getZoomLevel()
void	print()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

RECORD_SIZE

public static final int RECORD_SIZE

See Also:

Constant Field Values

Constructor Detail

ZoomDataRecord

public ZoomDataRecord(int zoomLevel,
                      int recordNumber,
                      java.lang.String chromName,
                      int chromId,
                      int chromStart,
                      int chromEnd,
                      int validCount,
                      float minVal,
                      float maxVal,
                      float sumData,
                      float sumSquares)

Method Detail

getZoomLevel

public int getZoomLevel()

getRecordNumber

public int getRecordNumber()

getChromName

public java.lang.String getChromName()

getChromId

public int getChromId()

getChromStart

public int getChromStart()

getChromEnd

public int getChromEnd()

getBasesCovered

public int getBasesCovered()

getMinVal

public float getMinVal()

getMaxVal

public float getMaxVal()

getSumData

public float getSumData()

getMeanVal

public float getMeanVal()

getSumSquares

public float getSumSquares()

print

public void print()