org.broad.igv.bbfile
Class BBZoomLevels

java.lang.Object
  org.broad.igv.bbfile.BBZoomLevels

public class BBZoomLevels
extends java.lang.Object

File retrieved from BigWig project at Google code on July 26, 2011, revision 36 http://code.google.com/p/bigwig/ This project provides java readers for the UCSC's BigWig and BigBed formats. It was originally developed by Martin Decautis and Jim Robinson for the Integrative Genomics Viewer (http://www.broadinstitute.org/igv). Thanks to Jim Kent and Ann Zweig and from UCSC for their assistance. Modification to work with GenomeView by Thomas Abeel.

Author:

Martin Decautis, Jim Robinson, Thomas Abeel

Constructor Summary

BBZoomLevels(net.sf.samtools.util.SeekableStream fis, long fileOffset, int zoomLevels, boolean isLowToHigh, int uncompressBufSize)

Method Summary

int	getZoomHeaderCount()
long	getZoomHeadersOffset()
java.util.ArrayList<BBZoomLevelFormat>	getZoomLevelFormats()
BBZoomLevelHeader	getZoomLevelHeader(int level)
java.util.ArrayList<BBZoomLevelHeader>	getZoomLevelHeaders()
RPTree	getZoomLevelRPTree(int level)
void	printZoomHeaders()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BBZoomLevels

public BBZoomLevels(net.sf.samtools.util.SeekableStream fis,
                    long fileOffset,
                    int zoomLevels,
                    boolean isLowToHigh,
                    int uncompressBufSize)

Method Detail

getZoomHeadersOffset

public long getZoomHeadersOffset()

getZoomHeaderCount

public int getZoomHeaderCount()

getZoomLevelHeaders

public java.util.ArrayList<BBZoomLevelHeader> getZoomLevelHeaders()

getZoomLevelHeader

public BBZoomLevelHeader getZoomLevelHeader(int level)

getZoomLevelFormats

public java.util.ArrayList<BBZoomLevelFormat> getZoomLevelFormats()

getZoomLevelRPTree

public RPTree getZoomLevelRPTree(int level)

printZoomHeaders

public void printZoomHeaders()