org.broad.igv.bbfile
Class BedFeature

java.lang.Object
  org.broad.igv.bbfile.BedFeature

public class BedFeature
extends java.lang.Object

File retrieved from BigWig project at Google code on July 26, 2011, revision 36 http://code.google.com/p/bigwig/ This project provides java readers for the UCSC's BigWig and BigBed formats. It was originally developed by Martin Decautis and Jim Robinson for the Integrative Genomics Viewer (http://www.broadinstitute.org/igv). Thanks to Jim Kent and Ann Zweig and from UCSC for their assistance. Modification to work with GenomeView by Thomas Abeel.

Author:

Martin Decautis, Jim Robinson, Thomas Abeel

Constructor Summary

BedFeature(int itemIndex, java.lang.String chromosome, int startBase, int endBase, java.lang.String restOfFieldsString)

Method Summary

java.lang.String	getChromosome()
int	getEndBase()
int	getItemIndex()
java.lang.String[]	getRestOfFields()
int	getStartBase()
void	print()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BedFeature

public BedFeature(int itemIndex,
                  java.lang.String chromosome,
                  int startBase,
                  int endBase,
                  java.lang.String restOfFieldsString)

Method Detail

getItemIndex

public int getItemIndex()

getChromosome

public java.lang.String getChromosome()

getStartBase

public int getStartBase()

getEndBase

public int getEndBase()

getRestOfFields

public java.lang.String[] getRestOfFields()

print

public void print()