org.broad.igv.bbfile
Class RPTreeChildNodeItem

java.lang.Object
  org.broad.igv.bbfile.RPTreeChildNodeItem

public class RPTreeChildNodeItem
extends java.lang.Object

File retrieved from BigWig project at Google code on July 26, 2011, revision 36 http://code.google.com/p/bigwig/ This project provides java readers for the UCSC's BigWig and BigBed formats. It was originally developed by Martin Decautis and Jim Robinson for the Integrative Genomics Viewer (http://www.broadinstitute.org/igv). Thanks to Jim Kent and Ann Zweig and from UCSC for their assistance. Modification to work with GenomeView by Thomas Abeel.

Author:

Martin Decautis, Jim Robinson, Thomas Abeel

Constructor Summary

RPTreeChildNodeItem(int startChromID, int startBase, int endChromID, int endBase, RPTreeNode childNode)

Method Summary

int	compareRegions(RPChromosomeRegion chromosomeRegion)
RPTreeNode	getChildNode()
RPChromosomeRegion	getChromosomeBounds()
void	print()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RPTreeChildNodeItem

public RPTreeChildNodeItem(int startChromID,
                           int startBase,
                           int endChromID,
                           int endBase,
                           RPTreeNode childNode)

Method Detail

getChromosomeBounds

public RPChromosomeRegion getChromosomeBounds()

getChildNode

public RPTreeNode getChildNode()

compareRegions

public int compareRegions(RPChromosomeRegion chromosomeRegion)

print

public void print()