Serialized Form

Package gnu.trove

Package gnu.trove.impl.hash

Class gnu.trove.impl.hash.THash extends java.lang.Object implements Serializable

serialVersionUID: -1792948471915530295L

Serialization Methods

readExternal

public void readExternal(java.io.ObjectInput in)
                  throws java.io.IOException,
                         java.lang.ClassNotFoundException

Throws:

java.io.IOException

java.lang.ClassNotFoundException

writeExternal

public void writeExternal(java.io.ObjectOutput out)
                   throws java.io.IOException

Throws:

java.io.IOException

Class gnu.trove.impl.hash.TIntFloatHash extends TPrimitiveHash implements Serializable

Serialization Methods

readExternal

public void readExternal(java.io.ObjectInput in)
                  throws java.io.IOException,
                         java.lang.ClassNotFoundException

Throws:

java.io.IOException

java.lang.ClassNotFoundException

writeExternal

public void writeExternal(java.io.ObjectOutput out)
                   throws java.io.IOException

Throws:

java.io.IOException

Class gnu.trove.impl.hash.TIntHash extends TPrimitiveHash implements Serializable

Serialization Methods

readExternal

public void readExternal(java.io.ObjectInput in)
                  throws java.io.IOException,
                         java.lang.ClassNotFoundException

Throws:

java.io.IOException

java.lang.ClassNotFoundException

writeExternal

public void writeExternal(java.io.ObjectOutput out)
                   throws java.io.IOException

Throws:

java.io.IOException

Class gnu.trove.impl.hash.TLongDoubleHash extends TPrimitiveHash implements Serializable

Serialization Methods

readExternal

public void readExternal(java.io.ObjectInput in)
                  throws java.io.IOException,
                         java.lang.ClassNotFoundException

Throws:

java.io.IOException

java.lang.ClassNotFoundException

writeExternal

public void writeExternal(java.io.ObjectOutput out)
                   throws java.io.IOException

Throws:

java.io.IOException

Class gnu.trove.impl.hash.TLongHash extends TPrimitiveHash implements Serializable

Serialization Methods

readExternal

public void readExternal(java.io.ObjectInput in)
                  throws java.io.IOException,
                         java.lang.ClassNotFoundException

Throws:

java.io.IOException

java.lang.ClassNotFoundException

writeExternal

public void writeExternal(java.io.ObjectOutput out)
                   throws java.io.IOException

Throws:

java.io.IOException

Class gnu.trove.impl.hash.TObjectHash extends THash implements Serializable

serialVersionUID: -3461112548087185871L

Serialization Methods

readExternal

public void readExternal(java.io.ObjectInput in)
                  throws java.io.IOException,
                         java.lang.ClassNotFoundException

Throws:

java.io.IOException

java.lang.ClassNotFoundException

writeExternal

public void writeExternal(java.io.ObjectOutput out)
                   throws java.io.IOException

Throws:

java.io.IOException

Class gnu.trove.impl.hash.TPrimitiveHash extends THash implements Serializable

Serialization Methods

readExternal

public void readExternal(java.io.ObjectInput in)
                  throws java.io.IOException,
                         java.lang.ClassNotFoundException

Throws:

java.io.IOException

java.lang.ClassNotFoundException

writeExternal

public void writeExternal(java.io.ObjectOutput out)
                   throws java.io.IOException

Throws:

java.io.IOException

Package gnu.trove.map

Package gnu.trove.map.hash

Class gnu.trove.map.hash.THashMap extends TObjectHash<K> implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(java.io.ObjectInput in)
                  throws java.io.IOException,
                         java.lang.ClassNotFoundException

Throws:

java.io.IOException

java.lang.ClassNotFoundException

writeExternal

public void writeExternal(java.io.ObjectOutput out)
                   throws java.io.IOException

Throws:

java.io.IOException

Class gnu.trove.map.hash.TIntFloatHashMap extends TIntFloatHash implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(java.io.ObjectInput in)
                  throws java.io.IOException,
                         java.lang.ClassNotFoundException

Throws:

java.io.IOException

java.lang.ClassNotFoundException

writeExternal

public void writeExternal(java.io.ObjectOutput out)
                   throws java.io.IOException

Throws:

java.io.IOException

Class gnu.trove.map.hash.TIntFloatHashMap.TKeyView extends java.lang.Object implements Serializable

Class gnu.trove.map.hash.TIntFloatHashMap.TValueView extends java.lang.Object implements Serializable

Class gnu.trove.map.hash.TLongDoubleHashMap extends TLongDoubleHash implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(java.io.ObjectInput in)
                  throws java.io.IOException,
                         java.lang.ClassNotFoundException

Throws:

java.io.IOException

java.lang.ClassNotFoundException

writeExternal

public void writeExternal(java.io.ObjectOutput out)
                   throws java.io.IOException

Throws:

java.io.IOException

Class gnu.trove.map.hash.TLongDoubleHashMap.TKeyView extends java.lang.Object implements Serializable

Class gnu.trove.map.hash.TLongDoubleHashMap.TValueView extends java.lang.Object implements Serializable

Package gnu.trove.set

Package gnu.trove.set.hash

Class gnu.trove.set.hash.THashSet extends TObjectHash<E> implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(java.io.ObjectInput in)
                  throws java.io.IOException,
                         java.lang.ClassNotFoundException

Throws:

java.io.IOException

java.lang.ClassNotFoundException

writeExternal

public void writeExternal(java.io.ObjectOutput out)
                   throws java.io.IOException

Throws:

java.io.IOException

Class gnu.trove.set.hash.TIntHashSet extends TIntHash implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(java.io.ObjectInput in)
                  throws java.io.IOException,
                         java.lang.ClassNotFoundException

Throws:

java.io.IOException

java.lang.ClassNotFoundException

writeExternal

public void writeExternal(java.io.ObjectOutput out)
                   throws java.io.IOException

Throws:

java.io.IOException

Class gnu.trove.set.hash.TLongHashSet extends TLongHash implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(java.io.ObjectInput in)
                  throws java.io.IOException,
                         java.lang.ClassNotFoundException

Throws:

java.io.IOException

java.lang.ClassNotFoundException

writeExternal

public void writeExternal(java.io.ObjectOutput out)
                   throws java.io.IOException

Throws:

java.io.IOException

Package gnu.trove.strategy

Class gnu.trove.strategy.IdentityHashingStrategy extends java.lang.Object implements Serializable

Package net.sf.jannot

Class net.sf.jannot.MemoryFeatureAnnotation extends MemoryListData<Feature> implements Serializable

Serialized Fields

qualifierKeys

java.util.HashSet<E> qualifierKeys

minStart

double minStart

maxEnd

double maxEnd

label

java.lang.String label

minScore

double minScore

maxScore

double maxScore

Class net.sf.jannot.MemoryListData extends java.util.ArrayList<T> implements Serializable

Package net.sf.jannot.alignment.mfa

Class net.sf.jannot.alignment.mfa.AlignmentAnnotation extends MemoryListData<Alignment> implements Serializable

serialVersionUID: -5188981624665479856L

Serialized Fields

conservation

byte[][] conservation

Package net.sf.jannot.exception

Class net.sf.jannot.exception.ReadFailedException extends java.lang.Exception implements Serializable

serialVersionUID: 1L

Class net.sf.jannot.exception.SaveFailedException extends java.lang.Exception implements Serializable

serialVersionUID: -2022595560772769970L

Package net.sf.jannot.parser

Class net.sf.jannot.parser.UnsupportedException extends java.lang.RuntimeException implements Serializable

serialVersionUID: -5256648264973150248L

Package net.sf.jannot.tabix

Class net.sf.jannot.tabix.RuntimeEOFException extends java.lang.RuntimeException implements Serializable

Class net.sf.jannot.tabix.RuntimeIOException extends java.lang.RuntimeException implements Serializable

Package org.apache.commons.math.stat

Class org.apache.commons.math.stat.AbstractUnivariateStatistic extends java.lang.Object implements Serializable

serialVersionUID: -8007759382851708045L

Class org.apache.commons.math.stat.Percentile extends AbstractUnivariateStatistic implements Serializable

serialVersionUID: -8091216485095130416L

Serialized Fields

quantile

double quantile

Determines what percentile is computed when evaluate() is activated with no quantile argument

Package org.broad

Class org.broad.LRUCache extends java.util.LinkedHashMap<K,V> implements Serializable

serialVersionUID: 3108325620729125294L

Serialized Fields

log

java.util.logging.Logger log

maxEntries

int maxEntries