org.broad.tribble
Class LittleEndianInputStream

java.lang.Object
  java.io.InputStream
      java.io.FilterInputStream
          org.broad.tribble.LittleEndianInputStream

All Implemented Interfaces:

java.io.Closeable

public class LittleEndianInputStream
extends java.io.FilterInputStream

File retrieved from BigWig project at Google code on July 26, 2011, revision 36 http://code.google.com/p/bigwig/ This project provides java readers for the UCSC's BigWig and BigBed formats. It was originally developed by Martin Decautis and Jim Robinson for the Integrative Genomics Viewer (http://www.broadinstitute.org/igv). Thanks to Jim Kent and Ann Zweig and from UCSC for their assistance. Modification to work with GenomeView by Thomas Abeel.

Author:

Martin Decautis, Jim Robinson, Thomas Abeel

Field Summary

Fields inherited from class java.io.FilterInputStream

in

Constructor Summary

LittleEndianInputStream(java.io.InputStream in)

Method Summary

boolean	readBoolean()
byte	readByte()
char	readChar()
double	readDouble()
float	readFloat()
int	readInt()
long	readLong()
short	readShort()
java.lang.String	readString() Read a null terminated byte array and return result as a string
int	readUnsignedByte()
int	readUnsignedShort()

Methods inherited from class java.io.FilterInputStream

available, close, mark, markSupported, read, read, read, reset, skip

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LittleEndianInputStream

public LittleEndianInputStream(java.io.InputStream in)

Method Detail

readBoolean

public boolean readBoolean()
                    throws java.io.IOException

Throws:

java.io.IOException

readByte

public byte readByte()
              throws java.io.IOException

Throws:

java.io.IOException

readUnsignedByte

public int readUnsignedByte()
                     throws java.io.IOException

Throws:

java.io.IOException

readShort

public short readShort()
                throws java.io.IOException

Throws:

java.io.IOException

readUnsignedShort

public int readUnsignedShort()
                      throws java.io.IOException

Throws:

java.io.IOException

readChar

public char readChar()
              throws java.io.IOException

Throws:

java.io.IOException

readInt

public int readInt()
            throws java.io.IOException

Throws:

java.io.IOException

readLong

public long readLong()
              throws java.io.IOException

Throws:

java.io.IOException

readDouble

public final double readDouble()
                        throws java.io.IOException

Throws:

java.io.IOException

readFloat

public final float readFloat()
                      throws java.io.IOException

Throws:

java.io.IOException

readString

public java.lang.String readString()
                            throws java.io.IOException

Read a null terminated byte array and return result as a string

Returns:

Throws:

java.io.IOException