org.broad.igv.tdf
Class TDFVaryTile

java.lang.Object
  org.broad.igv.tdf.TDFVaryTile

All Implemented Interfaces:

TDFTile

public class TDFVaryTile
extends java.lang.Object
implements TDFTile

Author:

jrobinso

Nested Class Summary

Nested classes/interfaces inherited from interface org.broad.igv.tdf.TDFTile

TDFTile.Type

Constructor Summary

TDFVaryTile(java.nio.ByteBuffer byteBuffer, int nSamples)

TDFVaryTile(int tileStart, float span, int[] start, float[][] data)

Method Summary

void	fill(java.nio.ByteBuffer byteBuffer, int nSamples)
int	getEndPosition(int idx)
java.lang.String	getName(int idx)
int	getSize()
int	getStartPosition(int idx)
int	getTileStart()
float	getValue(int row, int idx)
int	noValues() Returns the number of values that are available for each position in this Tile.
void	writeTo(BufferedByteWriter fos)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TDFVaryTile

public TDFVaryTile(java.nio.ByteBuffer byteBuffer,
                   int nSamples)
            throws java.io.IOException

Throws:

java.io.IOException

TDFVaryTile

public TDFVaryTile(int tileStart,
                   float span,
                   int[] start,
                   float[][] data)

Method Detail

noValues

public int noValues()

Description copied from interface: TDFTile

Returns the number of values that are available for each position in this Tile.

Specified by:

noValues in interface TDFTile

Returns:

getSize

public int getSize()

Specified by:

getSize in interface TDFTile

getTileStart

public int getTileStart()

Specified by:

getTileStart in interface TDFTile

getStartPosition

public int getStartPosition(int idx)

Specified by:

getStartPosition in interface TDFTile

getEndPosition

public int getEndPosition(int idx)

Specified by:

getEndPosition in interface TDFTile

getName

public java.lang.String getName(int idx)

Specified by:

getName in interface TDFTile

getValue

public float getValue(int row,
                      int idx)

Specified by:

getValue in interface TDFTile

writeTo

public void writeTo(BufferedByteWriter fos)
             throws java.io.IOException

Specified by:

writeTo in interface TDFTile

Throws:

java.io.IOException

fill

public void fill(java.nio.ByteBuffer byteBuffer,
                 int nSamples)
          throws java.io.IOException

Throws:

java.io.IOException