org.broad.igv.bbfile
Class BBTotalSummaryBlock

java.lang.Object
  org.broad.igv.bbfile.BBTotalSummaryBlock

public class BBTotalSummaryBlock
extends java.lang.Object

File retrieved from BigWig project at Google code on July 26, 2011, revision 36 http://code.google.com/p/bigwig/ This project provides java readers for the UCSC's BigWig and BigBed formats. It was originally developed by Martin Decautis and Jim Robinson for the Integrative Genomics Viewer (http://www.broadinstitute.org/igv). Thanks to Jim Kent and Ann Zweig and from UCSC for their assistance. Modification to work with GenomeView by Thomas Abeel.

Author:

Martin Decautis, Jim Robinson, Thomas Abeel

Field Summary

static int

TOTAL_SUMMARY_BLOCK_SIZE

Constructor Summary

BBTotalSummaryBlock(long basesCovered, float minVal, float maxVal, float sumData, float sumSquares)

BBTotalSummaryBlock(net.sf.samtools.util.SeekableStream fis, long fileOffset, boolean isLowToHigh)

Method Summary

long	getBasesCovered()
float	getMaxVal()
net.sf.samtools.util.SeekableStream	getMBBFis()
float	getMinVal()
float	getSumData()
long	getSummaryBlockOffset()
static int	getSummaryBlockSize()
float	getSumSquares()
void	printTotalSummaryBlock()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

TOTAL_SUMMARY_BLOCK_SIZE

public static final int TOTAL_SUMMARY_BLOCK_SIZE

See Also:

Constant Field Values

Constructor Detail

BBTotalSummaryBlock

public BBTotalSummaryBlock(net.sf.samtools.util.SeekableStream fis,
                           long fileOffset,
                           boolean isLowToHigh)

BBTotalSummaryBlock

public BBTotalSummaryBlock(long basesCovered,
                           float minVal,
                           float maxVal,
                           float sumData,
                           float sumSquares)

Method Detail

getSummaryBlockSize

public static int getSummaryBlockSize()

getMBBFis

public net.sf.samtools.util.SeekableStream getMBBFis()

getSummaryBlockOffset

public long getSummaryBlockOffset()

getBasesCovered

public long getBasesCovered()

getMinVal

public float getMinVal()

getMaxVal

public float getMaxVal()

getSumData

public float getSumData()

getSumSquares

public float getSumSquares()

printTotalSummaryBlock

public void printTotalSummaryBlock()