Difference between revisions of "Setting up a Genome Explorer repository"
Jump to navigation
Jump to search
Thomas Admin (talk | contribs) |
Thomas Admin (talk | contribs) |
||
| Line 16: | Line 16: | ||
# url to the session file. | # url to the session file. | ||
| − | + | An example row could be: | |
{| | {| | ||
|fusobac | |fusobac | ||
Revision as of 00:55, 16 November 2013
GenomeView allows you to set up a custom repository of genomes that will be loaded as primary view in the Genome Explorer
Recipe
- Set up a repository file
- Set up configuration file
- Make launch URL
Repository file format
The repository file is a tab-delimited file where each column has a special meaning.
- repository identifier
- display name for repository, should be reasonably short and informative people
- display image for repository, this should be a URL
- description text, this can be html code.
- url to the session file.
An example row could be:
| fusobac | Fusobacterium nucleatum animalis ATCC51191 | http://www.broadinstitute.org/software/genomeview/supplemental/fusobacterium/broadlogo.png | Fusobacterium nucleatum animalis ATCC51191 is from a colon sample. This strain was sequenced at Baylor College of Medicine. | http://www.broadinstitute.org/software/genomeview/supplemental/fusobacterium/Fuso_animalis_ATCC51191.session |
