Setting up a Genome Explorer repository
Revision as of 00:53, 16 November 2013 by Thomas Admin (talk | contribs) (Created page with "GenomeView allows you to set up a custom repository of genomes that will be loaded as primary view in the Genome Explorer == Recipe == # Set up a repository file # Set u...")
The printable version is no longer supported and may have rendering errors. Please update your browser bookmarks and please use the default browser print function instead.
GenomeView allows you to set up a custom repository of genomes that will be loaded as primary view in the Genome Explorer
Recipe
- Set up a repository file
- Set up configuration file
- Make launch URL
Repository file format
The repository file is a tab-delimited file where each column has a special meaning.
- repository identifier
- display name for repository, should be reasonably short and informative people
- display image for repository, this should be a URL
- description text, this can be html code.
- url to the session file.
For example
fusobac Fusobacterium nucleatum animalis ATCC51191 http://www.broadinstitute.org/software/genomeview/supplemental/fusobacterium/broadlogo.png Fusobacterium nucleatum animalis ATCC51191 is from a colon sample. This strain was sequenced at Baylor College of Medicine. http://www.broadinstitute.org/software/genomeview/supplemental/fusobacterium/Fuso_animalis_ATCC51191.session
