Difference between revisions of "Main Page"

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Welcome to the GenomeView manual. These pages aim to answer any questions you may have as an end-user, a platform-user or as a contributing developer.
 
Welcome to the GenomeView manual. These pages aim to answer any questions you may have as an end-user, a platform-user or as a contributing developer.
  
This documentation is completely open for anyone to contribute to, just click the edit-button near the top and you can help make this a better resource for everyone.
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This documentation is open for anyone to contribute to, just click the edit-button near the top and you can help make this a better resource for everyone. Due to increasing vandalism we were forced to shutdown anonymous editing and account sign-up. '''If you like an account, please drop a note to support@genomeview.org'''.  
  
'''At the moment we are transitioning the current documentation from genomeview.org/manual to this wiki. So not all information may be here yet. [[User:Thomas|Thomas]] ([[User talk:Thomas|talk]]) 19:18, 30 August 2013 (CEST)'''
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Feel free to copy documentation from the old manual to here, there are still some pages that need to be transferred and we're happy with any help you can spare.
  
== The 5 minute quick-start guide ==
 
[http://genomeview.org/content/quick-start-guide Getting started in 5 minutes with GenomeView]
 
  
== Manuals and support ==
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== [[Quick start|Getting started with GenomeView in 5 minutes]] ==
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<div style="float:left;width:49%">
 
<div style="float:left;width:49%">
 
{{Box-header|title=User manual}}
 
{{Box-header|title=User manual}}
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[[Preparing and loading data]] -- [[Preloaded data]]
 
[[Preparing and loading data]] -- [[Preloaded data]]
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[[Navigation]] -- [[Keyboard short-cuts]]
  
 
[[Visualizations]]
 
[[Visualizations]]
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[[Search for...]]
  
 
[[Manipulating and configuring the views]]
 
[[Manipulating and configuring the views]]
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[[Report a bug or request a feature]]
 
[[Report a bug or request a feature]]
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[[Supported versions]]
  
 
</div>
 
</div>
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{{Box-header|title=Platform-user manual}}
 
{{Box-header|title=Platform-user manual}}
 
These manual pages describe how to integrate GenomeView with your web-based platform or how to communicate with GenomeView from 3-rd party software.  
 
These manual pages describe how to integrate GenomeView with your web-based platform or how to communicate with GenomeView from 3-rd party software.  
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[[Using GenomeView from the command-line]]
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[[Integration]]
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[[Session files]] -- [[Configuration options]]
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[[Communicating with GenomeView]]
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[[Programming with GenomeView]]
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[[Setting up authentication and encryption]]
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[[Making a plugin]]
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[[Integrating GenomeView as an editor]]
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[[Setting up a Genome Explorer repository]]
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</div>
 
</div>
 
</div>
 
</div>
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{{Box-header|title=Developer manual}}
 
{{Box-header|title=Developer manual}}
 
These pages are aimed towards contributors to GenomeView and developers who work directly on the GenomeView code.
 
These pages are aimed towards contributors to GenomeView and developers who work directly on the GenomeView code.
</div>
 
</div>
 
<div style="clear:both;"></div>
 
  
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Currently most of this documentation lives on [https://sourceforge.net/p/genomeview/wiki/ Sourceforge].
  
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[[Unit test example data files]]
  
== Workshops, presentations and training ==
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</div>
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</div>
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<div style="clear:both;"></div>

Latest revision as of 17:16, 3 June 2014

Contents

Welcome to the GenomeView manual. These pages aim to answer any questions you may have as an end-user, a platform-user or as a contributing developer.

This documentation is open for anyone to contribute to, just click the edit-button near the top and you can help make this a better resource for everyone. Due to increasing vandalism we were forced to shutdown anonymous editing and account sign-up. If you like an account, please drop a note to support@genomeview.org.

Feel free to copy documentation from the old manual to here, there are still some pages that need to be transferred and we're happy with any help you can spare.


Getting started with GenomeView in 5 minutes

edit 

User manual

These manual pages describe how to use GenomeView and how to prepare your data to be usable in GenomeView.

Starting GenomeView

Preparing and loading data -- Preloaded data

Navigation -- Keyboard short-cuts

Visualizations

Search for...

Manipulating and configuring the views

Editing annotations

Exporting data and saving changes

More functionality with plugins

edit 

Getting help

Frequently asked questions

I have a problem, help me, please

Report a bug or request a feature

Supported versions



edit 

Platform-user manual

These manual pages describe how to integrate GenomeView with your web-based platform or how to communicate with GenomeView from 3-rd party software.

Using GenomeView from the command-line

Integration

Session files -- Configuration options

Communicating with GenomeView

Programming with GenomeView

Setting up authentication and encryption

Making a plugin

Integrating GenomeView as an editor

Setting up a Genome Explorer repository

edit 

Developer manual

These pages are aimed towards contributors to GenomeView and developers who work directly on the GenomeView code.

Currently most of this documentation lives on Sourceforge.

Unit test example data files