From GenomeView Manual
BAM2TDF is a command-line tool that converts BAM files to TDF (coverage) files.
You can download the latest version from the GenomeView nightly builds:
~$ java -jar bam2tdf.jar [-m <minimumMappingQuality>] <location of your bam file>
bam2tdf calculates fragment coverage, not physical coverage
- Java 7+ - BAM file needs to be sorted and indexed