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What extension should the tab-delimited pileup have?

Wed, 03/02/2011 - 01:16 — Thomas Abeel
Answer: 

For general instructions on preparing the pileup format
http://genomeview.org/content/preparing-pileup

For the tab delimited file, you should include .swig somewhere in the filename.

We typically end up with something like:
bigfile.bam.swig.bgz