Difference between revisions of "Setting up a Genome Explorer repository"
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== Repository file format == | == Repository file format == | ||
| − | The repository file is a tab-delimited file where each column has a special meaning. | + | The repository file is a tab-delimited file where each column has a special meaning. These should be one row per session, i.e. per data set. |
| + | |||
# repository identifier | # repository identifier | ||
| − | # display name for | + | # display name for session, should be reasonably short and informative people |
| − | # display image for | + | # display image for session, this should be a URL |
| − | # description text, this can be html code. | + | # description text for individual session, this can be html code. |
# url to the session file. | # url to the session file. | ||
Revision as of 00:55, 16 November 2013
GenomeView allows you to set up a custom repository of genomes that will be loaded as primary view in the Genome Explorer
Recipe
- Set up a repository file
- Set up configuration file
- Make launch URL
Repository file format
The repository file is a tab-delimited file where each column has a special meaning. These should be one row per session, i.e. per data set.
- repository identifier
- display name for session, should be reasonably short and informative people
- display image for session, this should be a URL
- description text for individual session, this can be html code.
- url to the session file.
An example row could be:
| fusobac | Fusobacterium nucleatum animalis ATCC51191 | http://www.broadinstitute.org/software/genomeview/supplemental/fusobacterium/broadlogo.png | Fusobacterium nucleatum animalis ATCC51191 is from a colon sample. This strain was sequenced at Baylor College of Medicine. | http://www.broadinstitute.org/software/genomeview/supplemental/fusobacterium/Fuso_animalis_ATCC51191.session |
