| Name | Last modified | Size | Description | |
|---|---|---|---|---|
| Parent Directory | - | |||
| AddOrReplaceReadGroups.jar | 2013-10-18 16:52 | 892K | ||
| BamIndexStats.jar | 2013-10-18 16:52 | 891K | ||
| BamToBfq.jar | 2013-10-18 16:52 | 905K | ||
| BuildBamIndex.jar | 2013-10-18 16:52 | 890K | ||
| CalculateHsMetrics.jar | 2013-10-18 16:52 | 960K | ||
| CheckIlluminaDirectory.jar | 2013-10-18 16:52 | 1.0M | ||
| CleanSam.jar | 2013-10-18 16:52 | 896K | ||
| CollectAlignmentSummaryMetrics.jar | 2013-10-18 16:52 | 939K | ||
| CollectGcBiasMetrics.jar | 2013-10-18 16:52 | 924K | ||
| CollectInsertSizeMetrics.jar | 2013-10-18 16:52 | 941K | ||
| CollectMultipleMetrics.jar | 2013-10-18 16:52 | 1.0M | ||
| CollectRnaSeqMetrics.jar | 2013-10-18 16:52 | 1.0M | ||
| CollectTargetedPcrMetrics.jar | 2013-10-18 16:52 | 964K | ||
| CompareSAMs.jar | 2013-10-18 16:52 | 857K | ||
| CreateSequenceDictionary.jar | 2013-10-18 16:52 | 907K | ||
| DownsampleSam.jar | 2013-10-18 16:52 | 892K | ||
| EstimateLibraryComplexity.jar | 2013-10-18 16:52 | 908K | ||
| ExtractIlluminaBarcodes.jar | 2013-10-18 16:52 | 1.0M | ||
| ExtractSequences.jar | 2013-10-18 16:52 | 914K | ||
| FastqToSam.jar | 2013-10-18 16:52 | 912K | ||
| FilterSamReads.jar | 2013-10-18 16:52 | 904K | ||
| FixMateInformation.jar | 2013-10-18 16:52 | 918K | ||
| IlluminaBasecallsToFastq.jar | 2013-10-18 16:52 | 1.0M | ||
| IlluminaBasecallsToSam.jar | 2013-10-18 16:52 | 1.0M | ||
| IntervalListTools.jar | 2013-10-18 16:52 | 900K | ||
| MakeSitesOnlyVcf.jar | 2013-10-18 16:52 | 1.5M | ||
| MarkDuplicates.jar | 2013-10-18 16:52 | 953K | ||
| MarkIlluminaAdapters.jar | 2013-10-18 16:52 | 903K | ||
| MeanQualityByCycle.jar | 2013-10-18 16:52 | 923K | ||
| MergeBamAlignment.jar | 2013-10-18 16:52 | 1.0M | ||
| MergeSamFiles.jar | 2013-10-18 16:52 | 912K | ||
| MergeVcfs.jar | 2013-10-18 16:52 | 1.5M | ||
| NormalizeFasta.jar | 2013-10-18 16:52 | 906K | ||
| QualityScoreDistribution.jar | 2013-10-18 16:52 | 921K | ||
| ReorderSam.jar | 2013-10-18 16:52 | 908K | ||
| ReplaceSamHeader.jar | 2013-10-18 16:52 | 891K | ||
| RevertSam.jar | 2013-10-18 16:52 | 894K | ||
| SamFormatConverter.jar | 2013-10-18 16:52 | 891K | ||
| SamToFastq.jar | 2013-10-18 16:52 | 900K | ||
| SortSam.jar | 2013-10-18 16:52 | 891K | ||
| SplitVcfs.jar | 2013-10-18 16:52 | 1.5M | ||
| ValidateSamFile.jar | 2013-10-18 16:52 | 958K | ||
| VcfFormatConverter.jar | 2013-10-18 16:52 | 1.5M | ||
| ViewSam.jar | 2013-10-18 16:52 | 891K | ||
| apache-ant-1.8.2-bzip2.jar | 2013-10-18 16:52 | 30K | ||
| commons-jexl-2.1.1.jar | 2013-10-18 16:52 | 261K | ||
| commons-logging-1.1.1.jar | 2013-10-18 16:52 | 59K | ||
| picard-1.100.jar | 2013-10-18 16:52 | 1.6M | ||
| sam-1.100.jar | 2013-10-18 16:52 | 623K | ||
| snappy-java-1.0.3-rc3.jar | 2013-10-18 16:52 | 967K | ||
| tribble-1.100.jar | 2013-10-18 16:52 | 293K | ||
| variant-1.100.jar | 2013-10-18 16:52 | 556K | ||