I'm getting "Max stacking depth reached", how do I see my other reads?

Answer: 

This is due to the high read depth.

By default the maximum depth that reads will be stacked is 50. You can change this behavior in the configuration panel:

File > configuration > short reads

Change the number in the box 'Maximum display depth of stacked reads...' to a higher number. This box is half-way down the screen.

Configure maximum stacking depth for short-readsConfigure maximum stacking depth for short-reads