Is there any way to make sure that the vertical scales for multiple sequencing lanes match in the pile up track?


Goto 'File'> 'Configuration' > 'Pile up tracks'

Set the maximum height to whatever you want it to be.

Where are the configuration and plugin directory of GenomeView?


The GenomeView configuration directory, this directory is named .genomeview and resides in your home directory. On a *nix system your home directory is typically located at /home/username. On Window XP it is found at C:\Documents and Settings\username.

If you have trouble finding this directory, you can start GenomeView, goto to the 'Help' menu and click 'About'. Near the bottom of that dialog it shows the path where to find the configuration file.

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